Tests based on polymorphism and divergence

MK test

Use the online server http://mkt.uab.es/mkt/MKT.asp to perform MK tests. Three dataset are available for D. melanogaster, D. simulans and D. yakuba.

Branch model

Analysis of the Primate lysozyme:

sequences, tree and control file

With PAML, fit and compare the following models

1. M0
2. Branch model
3. Clade model: test for selection in colobines and hominoids
4. Branch site model: test for selection in colobines and hominoids

Perform the same analyses with the larger dataset: sequences, tree