All source files and makefiles of the PopPhyl project C++ executables
| Genepop |
Classical population genetic tests and various more focused applications (e.g. inferences under isolation by distance). For Windows and Linux. |
| IDENTIX1.1 |
Permutation test of relatedness |
| GENETIX v4.05 |
Set of population genetics programs |
| PARTITION |
Bayesian identification of population sub-division |
| PARTITION_ML |
Maximum Likelihood test of population sub-division |
| NEUTRALLELIX |
Monolocus Neutrality Test |
| SWEEP_BOTT |
Detecting bottlenecks and selective sweeps |
| DETSEL |
Program to detect markers responding to selection |
| KsimPop |
logiciel pédagogique, conçu pour permettre aux étudiants de construire des modèles de biologie des populations |
| HGT_simul |
Program implementing the phylogenomic simulation procedure described in: Galtier N. 2007. A model of horizontal gene transfer and the bacterial phylogeny problem. Systematic Biology (in press). |
| PHYLO_WIN v1.2 |
Graphical interface to molecular phylogeny |
| NHML v3 |
Non-homogeneous maximum likelihood for phylogenetics |
| BAOBAB |
Program for editing and displaying large trees |
| CoMap |
A C++ shell program to detect co-evolving groups of sites |
| PhyloExplorer |
PhyloExplorer is a tool to facilitate assessment and management of phylogenetic tree collections. Given an input collection of rooted trees, PhyloExplorer provides facilities for obtaining statistics describing the collection, correcting invalid taxon names, extracting taxonomically relevant parts of the collection using a dedicated query language, and identifying related trees in the TreeBASE database. - Code is no longer maintained. |
| Macse |
MACS_E, a multiple sequence alignment program dedicated to coding DNA sequences. MACS_E is able to handle some sequences errors and is thus especially adapted to align reads or EST together with more reliable sequences. |
| BioPP |
Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics |
| Bio ++ Program Suite |
A set of programs for phylogenetic trees rec |