Softwares

DeCoSTAR

DeCoSTAR Software suite including all versions of DeCo: DeCoLT, ARt-DeCo, ADSeq as well as DeClone and ECCETerra.

ALPHA (ALignement of bacterioPHAges)

ALPHA is a tool designed for detailed comparative study of bacteriophage genomes.
Krister Swenson, Sèverine Bérard, Anne Bergeron and Annie Chateau

ARt-DeCo (Assembly Recovery through DeCo)

ARt-DeCo (available upon request) this software based on DeCo allows, in addition to rebuilding the order of genes for ancestral genomes, to propose new adjacencies between extant genes and thus complement extant genomes assemblies.
Yoann Anselmetti and Sèverine Bérard

DeCo (Detection of Co-evolution)

DeCo computes adjacencies (or any type of relation, like regulation, interaction, functional relationships) between ancestral genes from gene phylogenies reconciled with a species phylogeny according to duplications and losses.
Sèverine Bérard

SimCT (Similarity Clustering Tree)

SimCT is a generic tool to visualize ontology-based relationships for biological objects.
Sèverine Bérard, Laurent Tichit and Carl Herrmann

MS_Align (Mini-Satellite Alignment)

MS_Align is a tandem repeat sequences aligner.
Sèverine Bérard

	Severine.Berard{AT}umontpellier.fr	ISE-M, UMR 5554 CNRS/UM
	Phone: (33/0) 467 14 32 61	Place Eugène Bataillon - C.C. 064
	Fax: (33/0) 467 14 36 22	34095 Montpellier cedex 05 - France
	Last modified 04/01/2022